Prescription medications useful in treating canker sores (recurrent minor aphthous ulcers).

As discussed on this page, there are a number of prescription drugs that can be used to treat canker sores. Some of them have been formulated specifically for this purpose, others are know primarily as medications for other conditions but have been found to be beneficial for use with aphthous ulcers also.

As an alternative, our pages also discuss the use over-the-counter medications and suggest possible home remedy treatments.

Treating aphthous ulcers with prescription medications.

Most prescription medications that are used to treat canker sores tend to fall into one of two main general categories:

A) Anti-inflammatory medicines.

Anti-inflammatory medicines can help to minimize the extent to which a canker sore's ulceration will progress. The smaller an ulceration is the quicker it can heal.

B) "Anti-bacterial" collagenase inhibiting medicines.

This group of prescription items, at least at first glance, all seem to all be similar by way of the fact that they are each anti-bacterial in nature. While it is true that these products can provide that function it has also been discovered that these medicines possess the ability to inhibit the action of collagenase. Collagenase is a compound that can break down collagen (an important tissue protein) and its presence is instrumental in the formation of canker sore ulcerations.


Our review of dental literature shows that there are a number of prescription medications that have been studied or suggested for use in the treatment of canker sores. The items we discuss on this page are simply some of the more commonplace products dentists often utilize.

Any prescription medication should only be used under the supervision of a health care professional.


A) Anti-inflammatory prescription medications.

1) Aphthasol

Aphthasol (amlexanox) is a prescription compound whose sole intended use is for the treatment of canker sores (recurrent minor aphthous ulcers) and it quite possibly offers the most effective solution for those who suffer from them. The precise mechanism of action of Aphthasol is unknown although it has been found to be both anti-allergic as well as anti-inflammatory. Research studies have demonstrated that the use of Aphthasol can both accelerate the resolution of pain from canker sores and accelerate their healing. The use of Aphthasol (continuously or intermittently) has not been shown to reduce the rate of recurrence of canker sores.

One study evaluated participants on day three of their canker sores' presence. At this point 44% of the participants using Aphthasol vs. 20% of those not using this product reported complete resolution of pain from their canker sores. 21% of the participants using Aphthasol vs. 8% not using this product reported complete ulcer healing.

Aphthasol is a paste. When it is applied it forms a film over the sore so to both hold the product's active ingredient in place and also to cover over and protect the canker sore's ulcerated surface. The manufacturer's instructions include applying Aphthasol directly to a person's canker sores four times daily (after each meal and before bedtime) until healing has occurred.

2) Kenalog in Orabase

Kenalog (triamcinolone acetonide) is a synthetic corticosteroid. Corticosteroids have anti-inflammatory properties and therefore can help to limit the full extent to which a canker sore's ulceration will progress. The Orabase component of this product is a paste specially designed to adhere to the surface of oral lesions. As used in this formulation, the Orabase creates a protective film over the canker sore that holds the Kenalog in place, and also covers over and protects the canker sore's surface. The use of Kenalog has not been shown to decrease the rate of recurrence of canker sores.
      Fluocinonide (Lidex), betamethasone (Diprolene), and clobetasol (Temovate) are other corticosteriods that are used in similar fashion in the treatment of canker sores. A problem associated with the use of topical corticosteriods in general is that they can facilitate the overgrowth of Candida (an oral yeast-like fungus).

B) Collagenase inhibiting prescription medications.

1) Tetracycline

Clinical studies at the National Institute of Dental Research have found that rinsing with the antibiotic tetracycline several times a day can reduce the pain associated with canker sores and also speed up their healing. Patients are typically instructed to swish with tetracycline for up to five minutes (and then spit it out) several times a day. The use of tetracycline rinse has not been shown to reduce the rate of recurrence of canker sores.

2) Peridex

Peridex (chlorhexidine gluconate) is a prescription anti-bacterial mouthwash whose use has been shown to speed up the healing of canker sores. A regimen of rinsing (and spitting out) three times a day has been studied and found to provide a benefit. The use of chlorhexidine has not been shown to lessen the pain that accompanies canker sores. One problem associated with the use of this product is that it will stain teeth and white dental fillings.

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